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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV15212971 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0780/2022 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes ON455038 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-01-14 USA: South Dakota 29747 2022-05-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29410 98.87
OEAV15212974 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0783/2022 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes ON455039 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-01-13 USA: South Dakota 29747 2022-05-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29409 98.86
OEAV15212975 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0784/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes ON455048 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-04-01 USA: South Dakota 29758 2022-05-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29574 99.38
OEAV15212977 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0788/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes ON455053 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-04-18 USA: South Dakota 29758 2022-05-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29573 99.38
OEAV15212979 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0791/2022 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes ON455052 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-01-04 USA: South Dakota 29747 2022-05-09 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29395 98.82
OEAV15212980 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0792/2022 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes ON455054 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-01-05 USA: South Dakota 29747 2022-05-09 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29319 98.56
OEAV15212981 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0793/2022 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes ON455061 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-01-05 USA: South Dakota 29747 2022-05-09 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29404 98.85
OEAV15212986 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0798/2022 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes ON455047 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-01-10 USA: South Dakota 29747 2022-05-09 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29408 98.86
OEAV15212990 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0802/2022 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes ON455041 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-01-14 USA: South Dakota 29747 2022-05-09 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29410 98.87
OEAV15212993 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0805/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes ON455040 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-01-19 USA: South Dakota 29777 2022-05-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29595 99.39
OEAV15212994 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0806/2021 ON455069 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-01-20 USA: South Dakota 29777 2022-05-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29777 100.00
OEAV15212995 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0807/2021 ON455045 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-01-31 USA: South Dakota 29776 2022-05-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29776 100.00
OEAV15212996 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0808/2021 ON455046 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-01-31 USA: South Dakota 29777 2022-05-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29746 99.90
OEAV15212998 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0810/2021 ON455059 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-02-01 USA: South Dakota 29774 2022-05-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29774 100.00
OEAV15213000 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0812/2021 ON455074 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-02-01 USA: South Dakota 29777 2022-05-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29777 100.00
OEAV15213001 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0813/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), and ORF7a protein (ORF7a) genes, complete cds; ORF7b gene, complete sequence; and ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes ON455070 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-02-01 USA: South Dakota 29769 2022-05-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29697 99.76
OEAV15213003 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0815/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes ON455076 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-03-01 USA: South Dakota 29758 2022-05-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29758 100.00
OEAV15213009 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0822/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a gene, complete sequence; and ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes ON455037 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-03-18 USA: South Dakota 29775 2022-05-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29775 100.00
OEAV15213011 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0824/2022 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes ON455044 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2022-01-14 USA: South Dakota 29747 2022-05-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29410 98.87
OEAV15213012 SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0825/2021 ON455042 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-02-18 USA: South Dakota 29776 2022-05-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A. Biomedical Engineering, University of South Dakota 29776 100.00
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